The following were the standings of the 2008–09 Iran 2nd Division football season.
First round
Group A
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification or relegation |
|---|
| 1 | Nirou Moharekeh | 14 | 8 | 5 | 1 | 22 | 6 | +16 | 29 | Promoted Second Round |
| 2 | Sanati Kaveh | 14 | 6 | 6 | 2 | 19 | 12 | +7 | 24 |
| 3 | Per. Borazjan | 14 | 6 | 6 | 2 | 25 | 10 | +15 | 24 | |
| 4 | Sh. Lahijan | 14 | 5 | 2 | 7 | 14 | 19 | −5 | 17 |
| 5 | Eftekhar | 14 | 4 | 4 | 6 | 11 | 13 | −2 | 16 |
| 6 | Sazan Rah | 14 | 3 | 5 | 6 | 10 | 18 | −8 | 14 |
| 7 | Per. Zahedan | 14 | 3 | 5 | 6 | 14 | 14 | 0 | 14 |
| 8 | Sanat Gaz | 14 | 3 | 3 | 8 | 8 | 16 | −8 | 12 | Relegation Play Off |
| 9 | Ararat (R) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Relegation to 3rd Division |
Group B
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification or relegation |
|---|
| 1 | Zob Ahan Ardabil | 15 | 10 | 3 | 2 | 34 | 11 | +23 | 33 | Promoted Second Round |
| 2 | Mes Sarcheshmeh | 15 | 7 | 5 | 3 | 28 | 13 | +15 | 26 |
| 3 | Sh. Bandar Anzali | 15 | 7 | 4 | 4 | 18 | 15 | +3 | 25 | |
| 4 | Sh. Yasouj | 15 | 5 | 5 | 5 | 17 | 15 | +2 | 20 |
| 5 | Damash Tehran | 15 | 5 | 4 | 6 | 15 | 16 | −1 | 19 |
| 6 | Armin | 15 | 5 | 4 | 6 | 17 | 19 | −2 | 19 |
| 7 | Hepco | 15 | 4 | 5 | 6 | 15 | 22 | −7 | 17 |
| 8 | Shandiner Bari | 15 | 4 | 3 | 8 | 15 | 31 | −16 | 15 | Relegation Play Off |
| 9 | Zagros (R) | 8 | 0 | 1 | 7 | 3 | 20 | −17 | 1 | Relegation to 3rd Division |
Group C
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification or relegation |
|---|
| 1 | Naft Tehran | 16 | 12 | 2 | 2 | 36 | 14 | +22 | 38 | Promoted Second Round |
| 2 | Iranjavan | 16 | 9 | 4 | 3 | 25 | 14 | +11 | 31 |
| 3 | Moghavemat Tehran | 16 | 10 | 1 | 5 | 32 | 18 | +14 | 31 | |
| 4 | Sh. Langarud | 16 | 7 | 3 | 6 | 31 | 19 | +12 | 24 |
| 5 | Foolad Yazd | 16 | 5 | 4 | 7 | 29 | 29 | 0 | 19 |
| 6 | Ard | 16 | 5 | 4 | 7 | 17 | 20 | −3 | 19 |
| 7 | Sh. Shahrekord | 16 | 5 | 1 | 10 | 17 | 37 | −20 | 16 |
| 8 | Palayesh Gaz | 16 | 3 | 4 | 9 | 18 | 34 | −16 | 13 | Relegation Play Off |
| 9 | Tarbiat Bandar Abbas (R) | 16 | 4 | 1 | 11 | 11 | 31 | −20 | 13 | Relegation to 3rd Division |
Group D
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Qualification or relegation |
|---|
| 1 | Foolad Novin | 16 | 8 | 7 | 1 | 28 | 10 | +18 | 31 | Promoted Second Round |
| 2 | Est. Jonub | 16 | 8 | 5 | 3 | 19 | 14 | +5 | 29 |
| 3 | Per. Qazvin | 16 | 6 | 8 | 2 | 19 | 14 | +5 | 26 | |
| 4 | Sepidrood | 16 | 6 | 4 | 6 | 22 | 19 | +3 | 22 |
| 5 | Sanaye Talaee | 16 | 5 | 5 | 6 | 18 | 20 | −2 | 20 |
| 6 | Payam Shohada | 16 | 3 | 7 | 6 | 14 | 20 | −6 | 16 |
| 7 | Kheybar | 16 | 4 | 4 | 8 | 14 | 24 | −10 | 16 |
| 8 | Sh. Kerman | 16 | 4 | 4 | 8 | 15 | 23 | −8 | 16 | Relegation Play Off |
| 9 | Pasargad (R) | 16 | 3 | 6 | 7 | 18 | 23 | −5 | 15 | Relegation to 3rd Division |
Second round
Group A
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Promotion |
|---|
| 1 | Sanati Kaveh | 6 | 4 | 0 | 2 | 7 | 5 | +2 | 12 | Promotion to 2009–10 Azadegan League |
| 2 | Foolad Novin | 6 | 3 | 1 | 2 | 7 | 5 | +2 | 10 |
| 3 | Iranjavan | 6 | 2 | 1 | 3 | 5 | 7 | −2 | 7 | |
| 4 | Zob Ahan Ardabil | 6 | 2 | 0 | 4 | 6 | 7 | −1 | 6 |
On August 30, 2009 Iranjavan bought Moghavemat Mersad Football Club for a reported price of around $480,000 so Iranjavan Promoted Azadegan League
Group B
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts | Promotion |
|---|
| 1 | Mes Sarcheshmeh | 6 | 3 | 2 | 1 | 8 | 5 | +3 | 11 | Promotion to 2009–10 Azadegan League |
| 2 | Naft Tehran | 6 | 1 | 4 | 1 | 4 | 4 | 0 | 7 |
| 3 | Est. Jonub | 6 | 1 | 3 | 2 | 5 | 6 | −1 | 6 | |
| 4 | Nirou Moharekeh | 6 | 1 | 3 | 2 | 4 | 6 | −2 | 6 |
Relegation play-off
| Team 1 | Score | Team 2 |
|---|
| Shandiner Bari Urmia | 0-1 | Sanat Gaz Sarakhs |
Shandiner Bari Urmia relegated to 3rd Division
April 10, Ghods Stadium, Tehran
| Team 1 | Score | Team 2 |
|---|
| Shahrdari Kerman | 1-2 | Palayesh Gaz |
Shahrdari Kerman relegated to 3rd Division